User contributions
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- 18:15, 18 April 2019 (diff | hist) . . (+46) . . How to prepare a system (→Ligand topology - using Amber force-fields in Gromacs)
- 18:10, 18 April 2019 (diff | hist) . . (+107) . . How to prepare a system
- 18:08, 18 April 2019 (diff | hist) . . (+153) . . How to prepare a system (→Ligand topology - using Amber force-fields in Gromacs)
- 18:06, 18 April 2019 (diff | hist) . . (+385) . . How to prepare a system
- 17:30, 18 April 2019 (diff | hist) . . (+464) . . How to prepare a system
- 17:26, 18 April 2019 (diff | hist) . . (0) . . How to do MDs (→Prepare the system)
- 22:22, 16 April 2019 (diff | hist) . . (+25) . . How to use some common python packages
- 22:21, 16 April 2019 (diff | hist) . . (+26) . . How to use some common python packages (→MDAnalysis)
- 22:21, 16 April 2019 (diff | hist) . . (+21) . . How to use some common python packages (→mdtraj)
- 22:20, 16 April 2019 (diff | hist) . . (+22) . . N How to use some common python packages (Created page with "=mdtraj= =MDAnalysis=")
- 22:20, 16 April 2019 (diff | hist) . . (+44) . . How-to (→Analysis)
- 14:44, 16 April 2019 (diff | hist) . . (+15) . . How to prepare a system (→Protonation states of amino acids)
- 14:43, 16 April 2019 (diff | hist) . . (+57) . . How to prepare a system (→Protonation states of amino acids)
- 13:43, 16 April 2019 (diff | hist) . . (+175) . . How to prepare a system
- 16:07, 15 April 2019 (diff | hist) . . (-17) . . How to prepare a system (→ParmEd)
- 16:01, 15 April 2019 (diff | hist) . . (+7) . . How to prepare a system (→ParmEd)
- 16:00, 15 April 2019 (diff | hist) . . (+57) . . How to prepare a system (→ParmEd)
- 21:06, 9 April 2019 (diff | hist) . . (+134) . . How to do covariance analysis (→From scratch)
- 21:04, 9 April 2019 (diff | hist) . . (+563) . . N How to do covariance analysis (Created page with "=From scratch= #Get coordinates using MDTraj #Align the structures #Subtract by mean #Divided by SDs #Combine residual fluctuations (3Nx3N > NxN) The key computation is to co...")
- 20:58, 9 April 2019 (diff | hist) . . (+47) . . How-to
- 20:08, 9 April 2019 (diff | hist) . . (+286) . . How to make figures for publications
- 20:05, 9 April 2019 (diff | hist) . . (+20) . . How to make figures for publications (→Labels and Ticks)
- 20:05, 9 April 2019 (diff | hist) . . (+154) . . How to make figures for publications (→Labels and Ticks)
- 20:02, 9 April 2019 (diff | hist) . . (-24) . . How to make figures for publications (→Labels and Ticks)
- 20:02, 9 April 2019 (diff | hist) . . (+374) . . How to make figures for publications (→Matplotlib)
- 19:36, 9 April 2019 (diff | hist) . . (+129) . . How to make figures for publications (→Matplotlib)
- 19:35, 9 April 2019 (diff | hist) . . (+141) . . How to make figures for publications (→Matplotlib)
- 19:34, 9 April 2019 (diff | hist) . . (+12) . . N How to make figures for publications (Created page with "=Matplotlib=")
- 19:34, 9 April 2019 (diff | hist) . . (+42) . . How-to
- 18:35, 7 April 2019 (diff | hist) . . (0) . . How to do MDs (→Prepare the system)
- 18:33, 7 April 2019 (diff | hist) . . (+1) . . How to do MDs (→Prepare the system)
- 18:33, 7 April 2019 (diff | hist) . . (+107) . . How to do MDs (→Prepare the system)
- 02:10, 7 April 2019 (diff | hist) . . (+24) . . How to compile Gromacs
- 19:55, 4 April 2019 (diff | hist) . . (-3) . . How-to (→Simulations)
- 19:55, 4 April 2019 (diff | hist) . . (0) . . m How to prepare a system (Kevin moved page How to prepare your system to How to prepare a system)
- 19:55, 4 April 2019 (diff | hist) . . (+37) . . N How to prepare your system (Kevin moved page How to prepare your system to How to prepare a system) (current)
- 17:34, 3 April 2019 (diff | hist) . . (+71) . . How to make movies (→Look at Gromacs trajectories in VMD)
- 17:34, 3 April 2019 (diff | hist) . . (+1,210) . . How to make movies
- 17:33, 3 April 2019 (diff | hist) . . (-1,235) . . How to do MDs
- 12:30, 3 April 2019 (diff | hist) . . (+323) . . How to make movies (→The CLI style (Script it!))
- 12:24, 3 April 2019 (diff | hist) . . (+146) . . How to make movies
- 12:21, 3 April 2019 (diff | hist) . . (+2,995) . . N How to make movies (Created page with "=VMD= ==Credit to Madison Block and Sam Battey== [http://www.dxulab.com/wiki/vmdtipsandtricks From here] When setting or changing your working directory or destination folder...")
- 12:21, 3 April 2019 (diff | hist) . . (+69) . . How-to
- 14:26, 6 December 2018 (diff | hist) . . (+221) . . How to do MDs
- 03:12, 5 December 2018 (diff | hist) . . (0) . . How to do dockings (→Contact Statistics)
- 03:12, 5 December 2018 (diff | hist) . . (+385) . . How to do dockings (→Looking at the results)
- 19:16, 4 December 2018 (diff | hist) . . (+27) . . How to do MDs (→Make a movie)
- 19:15, 4 December 2018 (diff | hist) . . (+575) . . How to do MDs (→Make a movie)
- 19:07, 4 December 2018 (diff | hist) . . (+14) . . How to do dockings (→Get binding poses)
- 19:07, 4 December 2018 (diff | hist) . . (+46) . . How to do dockings (→Get binding poses)
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